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REVIEW: Heparan Sulfate–Protein Binding Specificity

M. A. Nugent1,2,3*, J. Zaia1, and J. L. Spencer1

1Department of Biochemistry­ and 2Department of Ophthalmology, Boston University School of Medicine, 72 East Concord Street, Boston, MA 02118, USA; E-mail: mnugent@bu.edu

3Department of Biomedical Engineering, Boston University, Boston, MA 02215, USA

* To whom correspondence should be addressed.

Received March 13, 2013
Heparan sulfate (HS) represents a large class of linear polysaccharides that are required for the function of all mammalian physiological systems. HS is characterized by a repeating disaccharide backbone that is subject to a wide range of modifications, making this class of macromolecules arguably the most information dense in all of biology. The majority of HS functions are associated with the ability to bind and regulate a wide range of proteins. Indeed, recent years have seen an explosion in the discovery of new activities for HS where it is now recognized that this class of glycans functions as co-receptors for growth factors and cytokines, modulates cellular uptake of lipoproteins, regulates protease activity, is critical to amyloid plaque formation, is used by opportunistic pathogens to enter cells, and may even participate in epigenetic regulation. This review will discuss the current state of understanding regarding the specificity of HS–protein binding and will describe the concept that protein binding to HS depends on the overall organization of domains within HS rather than fine structure.
KEY WORDS: heparin, heparan sulfate, glycosaminoglycans, proteoglycans, protein binding, bioinformatics

DOI: 10.1134/S0006297913070055