KRUGLOVA et al.916
BIOCHEMISTRY (Moscow) Vol. 89 No. 5 2024
different approaches. First, we used the “tradition-
al” method of knocking out the LPAP gene using the
CRISPR/Cas9 technology, and after subsequent cloning
we obtained a series of monoclonal cultures of Jur-
kat LPAP
KO
(hereinafter referred to as LPAP
mKO
). And
next, using the recently developed SORTS method [18],
we obtained a polyclonal Jurkat population with the
knockout of LPAP (hereinafter referred to as LPAP
pKO
).
The second approach has some advantages. Firstly, the
Jurkat cell line is heterogeneous, and when working
with individual clones of this line, there is a high risk
that the observed phenotype is due to characteristics
of a particular clone, and not to the experimental im-
pact. Secondly, it has been shown that the cell clones
can be very different from both the parental popula-
tion and polyclonal population of the sorted knockout
cells due to consolidation of the off-target genomic
changes [17-19].
In all Jurkat LPAP
mKO
cultures, the CD45 expres-
sion was reduced to 30% of the wild-type level (Fig.1c).
The CD45 level in the Jurkat LPAP
pKO
cells was 37% of
the CD45 level in the wild-type cells (Fig. 1d). Agree-
ment between the data obtained for the individual
clones and for the polyclonal population allows us to
exclude contribution of interclonal variability to the
observed phenotype. As a control, we used the CD59
and CD98 molecules as “irrelevant” proteins, for which
there is no data on their interaction with LPAP. The level
of “irrelevant” proteins CD59 and CD98 also decreased,
but to a significantly lesser extent than CD45 (Fig. 1c;
p < 0.0001). This indicates specific nature of the decrease
in the CD45 protein level in the LPAP knockout cells.
CD45 expression correlates with the level of
LPAP. After we discovered that the LPAP knockout
resulted in the decrease in the CD45 protein level, we
decided to investigate whether restoration of the level
of LPAP in the cells could increase the phosphatase ex-
pression. For this purpose, we selected one of the Jur-
kat LPAP
mKO
clones and introduced the gene encoding
LPAP
wt
into it using stable lentiviral transduction. The
resulting population was then cloned and the effect of
restoration of the expression of LPAP and CD45 pro-
teins was assessed using flow cytometry. When testing
21 Jurkat subclones, we found high level of correlation
between the CD45 and LPAP expression (Spearman
correlation coefficient r = 0.77, p < 0.0001) (Fig. 2a).
In contrast, for the clones tested, there was no signif-
icant correlation between the LPAP expression and
expression of the irrelevant protein CD98 (r = 0.02)
(Fig.2b). As an additional control, we used the Jurkat
WT clones, in which there was also no correlation be-
tween the levels of LPAP and CD45 (Fig. 2c). This con-
trol shows that the correlation shown in Fig.2a is not
the result of a cloning procedure.
Since the described result was shown in the cells
derived from a single Jurkat LPAP
KO
clone and could
be due to characteristics of the randomly selected clone,
we decided to verify the results with the data obtained
from a polyclonal knockout. For this purpose, the gene
encoding LPAP
wt
, or the GFP gene in the control sam-
ple, was introduced into the Jurkat LPAP
pKO
cells by
lentiviral transduction. During transduction, three in-
creasing doses of the virus were used (#1, #2, #3), after
which expression of LPAP and CD45 in the resulting
cultures was analyzed using flow cytometry. With in-
crease of the LPAP level (Fig.2d), the amount of CD45
in the cells also increased (Fig. 2, e, f). Difference be-
tween the levels of surface and total CD45 observed
in the pKO cells did not change upon re-expression
of LPAP (Fig. 2e). This indicates that in the absence
of LPAP, CD45 is degraded and is not retained and ac-
cumulated in the vesicular system of the cell.
In the cells with enhanced LPAP expression
the CD45 level increases. In the previous step, we
found correlation between the LPAP and CD45 levels
in the Jurkat cells with the LPAP levels ranging from
0% to 100% and CD45 levels ranging from 30% to
100%, relative to their endogenous expression levels.
However, the question arises whether this correla-
tion would persist with further increase in the level
of LPAP in the cells. Using lentiviral transduction, a
construct containing the LPAP-Flag-IRES-GFP cassette
was introduced into the Jurkat cells. After two rounds
of GFP
hi
cell sorting, the level of LPAP increased mark-
edly (Fig. 3a). In order to distinguish between the
endogenous LPAP and exogenous LPAP-Flag, electro-
phoresis was performed in the 18% PAAG. Increase
in the intensity of the band with the increased mo-
lecular weight was observed, which corresponded to
the LPAP protein with the Flag peptide tag, compared
with the intensity of the endogenous LPAP bands
(Fig.3b).
We hypothesized that in the Jurkat lymphoid cells
there is a special mechanism for homeostatic regula-
tion of LPAP levels, which cannot be bypassed by len-
tiviral transduction. Then we took the K562 cells of the
erythromyeloid lineage, which carry CD45 on the sur-
face, but are practically devoid of the endogenous LPAP
(MFI = 3000). After lentiviral transduction, the K562
cells expressed high levels of LPAP-Flag (MFI = 116,000)
(Fig. 3c). At the same time, the CD45 protein level also
increased 3.1-fold (Fig. 3d). Thus, both the increased
LPAP expression and its ectopic expression led to the
increased CD45 expression.
LPAP knockout reduces CD3-induced expres-
sion of the activation molecule CD69. One of the ear-
ly manifestations of T cell activation is upregulation of
the CD69 protein exposure on the plasma membrane.
In order to evaluate possible contribution of LPAP to
intracellular signal transduction, we compared expres-
sion of the CD69 molecule on the Jurkat WT and Jurkat
LPAP
pKO
cells upon activation with PMA or antibodies