REVIEW: Intracellular Cargo Transport by Kinesin-3 Motors
N. Siddiqui and A. Straube*
Centre for Mechanochemical Cell Biology, University of Warwick, Coventry, CV4 7AL, UK; E-mail: anne@mechanochemistry.org* To whom correspondence should be addressed.
Received February 1, 2017; Revision received April 11, 2017
Intracellular transport along microtubules enables cellular cargoes to efficiently reach the extremities of large, eukaryotic cells. While it would take more than 200 years for a small vesicle to diffuse from the cell body to the growing tip of a one-meter long axon, transport by a kinesin allows delivery in one week. It is clear from this example that the evolution of intracellular transport was tightly linked to the development of complex and macroscopic life forms. The human genome encodes 45 kinesins, 8 of those belonging to the family of kinesin-3 organelle transporters that are known to transport a variety of cargoes towards the plus end of microtubules. However, their mode of action, their tertiary structure, and regulation are controversial. In this review, we summarize the latest developments in our understanding of these fascinating molecular motors.
KEY WORDS: molecular motors, microtubule-based transport, kinesin, autoinhibition, intracellular transport, Unc104/KIF1, cargo traffickingDOI: 10.1134/S0006297917070057
Kinesins are molecular motors that step along microtubule tracks, thereby converting the chemical energy of one ATP per step into mechanical work. While moving along the microtubule, kinesins haul intracellular cargo such as chromosomes or mitochondria to achieve their correct positioning and transport secretory vesicles from the cell center to the cell cortex. Common to all kinesins is a structure that consists of a motor domain, a neck, and a tail. The motor domain combines both microtubule binding and ATPase activity. The ATP hydrolysis cycle is coupled to conformational changes within the motor and neck domains that result in forward movement of the tail-attached cargo. ATP turnover drives a sequence of conformational changes that cyclically change the microtubule binding affinity of the motor domains [1]. Kinesin motors exist in all eukaryotes and have been divided into 15 families based on the position and sequence homology of their motor domain [2, 3]. Amongst the 45 human kinesins, the largest family is the kinesin-3 family, a class of plus-end-directed transporters that have been implicated in the long-distance transport of vesicles and organelles in a variety of eukaryotic cells.
The founding member of the kinesin-3 family is Unc-104 from the nematode worm Caenorhabditis elegans. Mutations in Unc-104 cause impaired transport of synaptic vesicles to the axon terminal and uncoordinated and slow movement of the nematode [4, 5]. Kinesin-3 family members have since been identified as fast organelle transporters in the amoeba Dictyostelium discoideum [6], as endosome transporters in fungi [7-9], and as transporters of vesicles, viral particles, and mitochondria in mammalian cells [10-17]. Kinesin-3s are thought to have been present in the last common eukaryotic ancestor, suggesting that cytoplasmic vesicle transport is evolutionarily ancient, even though today’s land plants lack kinesin-3s [3]. The kinesin-3 family comprises six subfamilies: the KIF1, KIF13, KIF14, KIF16, and KIF28 motors [18] plus a fungal-specific group of short kinesin-3-like proteins [19] (Fig. 1). While vertebrates usually have nine kinesin-3 genes with one to three of these representing each of the five major subfamilies [18], filamentous fungi usually have one KIF1 representative (Kin3 in Ustilago maydis, UncA in Aspergillus, and NKin2 in Neurospora crassa) plus one short kinesin-3-like protein (UncB in Aspergillus and NKin3 in Neurospora crassa) [7-9, 19]. Please see Fig. 1 for the phylogenetic relationship of kinesin-3 family members from vertebrates (Homo sapiens), insects (Drosophila melanogaster), worms (Caenorhabditis elegans), and several fungi, incorporating all motors mentioned in this review.
Fig. 1. Kinesin-3 tree. Phylogenetic tree of all kinesin-3 family members from Homo sapiens (Hs), Drosophila melanogaster (Dm), Caenorhabditis elegans (Ce), Ustilago maydis (Um), Aspergillus nidulans (An), Neurospora crassa (Nc), and Dictyostelium discoideum (Dd). Selected kinesin-3 members from Rattus norvegicus (Rn), Gibberella moniliformis (Gm), and Cochliobolus heterostrophus (Ch) are also shown. Subfamilies are indicated in bold font. Human KIF5A, a kinesin-1, was used as root (shown in gray). To calculate tree information in Clustal Omega [130], kinesin motor domain sequences were aligned and cropped to a ~330-bp-long conserved region. The tree information was then used to generate a radial tree using T-REX tree viewer [131].
The number and variety of kinesin-3 motors in higher eukaryotes likely reflects the requirement for many different cargoes to be transported into different regions of the cell; thus, the different kinesin-3s are equipped with different specificities for both the cargo and the microtubule track and are activated by different mechanisms, as we will detail in the following sections.
CELLULAR FUNCTION AND HUMAN DISEASE
Kinesin-3-mediated transport is required for neuronal morphogenesis and function; mutations in any of the KIF1 motors KIF1A, KIF1B, or KIF1C cause neurological disorders, spastic paraplegia, or multiple sclerosis both in human patients and mouse models [13, 20-23]. DmUnc104 mutants also show defects in neuronal development, in particular in the morphogenesis of synaptic terminals and dendrites [24]. In fungi, transport of endosomes by kinesin-3 motors is required for optimal hyphal growth [9, 25]. Caenorhabditis elegans worms require axonal transport by Unc-104 for the coordination of their movement [5]. In addition, kinesin-3 motors have been shown to regulate signaling processes and the orderly progression of cell division. For example, KIF16A tethers the pericentriolar material (PCM) to the daughter centriole during mitosis, thereby preventing PCM fragmentation and enabling the formation of a bipolar mitotic spindle [26]; and KIF13A translocates a component of the cell abscission machinery to the spindle midzone, thereby controlling cytokinesis [27]. Likewise, deletion of the sole kinesin-3 in U. maydis results in a cell separation defect [7]. Important cargoes of kinesin-3 proteins are summarized in the table and range from mitochondria and viruses to vesicles containing a variety of receptors, pre-synaptic signaling proteins, microtubule regulators, and phospholipids [11, 12, 14, 15, 28-31]. It is becoming clear that the main function of kinesin-3 motors across species is the long-distance transport of membranous cargo. Kinesin-3 motors are exceptional in their high processivity, i.e. the distance they walk before falling off the microtubule track. This makes them particularly suited for long-haul tasks, and in the next section we will discuss the structure of kinesin-3 molecules and point out the features that underlie their properties.
Kinesin-3 cargoes. List of selected cargoes identified to be transported
by kinesin-3 family members
STRUCTURE OF KINESIN-3 MOTORS
All kinesin motors that walk towards the plus end of microtubules have their motor domain at the N-terminus of the molecule. This is also true for kinesin-3 family motors (Fig. 2a). What sets kinesin-3 motors apart from other kinesins is the organization of the neck region, which contains a β-sheet as well as a helix [18], and the presence of a forkhead-associated (FHA) domain [45] in the tail. In addition to the FHA domain, the tail region contains several short coiled-coils and diverse protein and lipid interaction domains that mediate binding to cargo and regulators (Fig. 2, a and b). In this section, we will discuss kinesin-3 specific features of each region, those that are common to most kinesin-3 motors and those that give a motor unique properties.
Fig. 2. Structure of kinesin-3 motors. a) Primary structure of human kinesin-3 members with characteristic N-terminal motor domain, FHA domain, and tail with several short coiled-coil (CC) regions in addition to a variety of protein or lipid interaction motifs. b) Schematic representation of a dimeric kinesin-3 motor and its interaction with the microtubule surface as well as a cargo vesicle. c) Structural model of kinesin motor domains binding to the microtubule (one αβ-tubulin heterodimer shown, in gray). The flexible C-terminal tubulin tails (E-hooks) are indicated in green. Key regions of the kinesin motor domain (blue) that contribute to interaction with microtubules are highlighted in red for both KIF5A, a kinesin-1, and KIF1A, a kinesin-3. Key residues that were shown to contribute to 10-fold higher processivity of kinesin-3 are shown in magenta [53, 54]. PDB accession numbers: 4UXP and 4UXY.
The motor domain binds to the microtubule, and the energy from ATP hydrolysis is used to produce directional movement [46, 47]. A characteristic feature of the kinesin-3 family is the presence of a stretch of positively charged lysine residues designated as the K-loop in loop 12 of the motor domain. This loop is ideally positioned so that it can contact the negatively charged glutamate-rich (E-hook) C-terminal tail of β-tubulin (Fig. 2c). The K-loop was proposed to enable processive motion by monomeric KIF1A by mediating diffusive interaction to microtubules throughout the ATPase cycle [48, 49]. However, while the K-loop in KIF1, KIF13, and KIF16 has been shown to increase microtubule affinity [50-52], an increase in processivity could not be attributed to the K-loop when these motors are working as dimers [50]. Instead, the K-loop increases the microtubule-binding rate and enables kinesin-3 motors to effectively work in teams [50, 51]. Recent comparative high-resolution cryoelectron microscopy structures of kinesin-1 (KIF5A) and kinesin-3 (KIF1A) motor domains bound to microtubules in different nucleotide states paired with molecular dynamics simulations ascertained which family-specific residue changes result in the 200-fold increased affinity of kinesin-3 motors to microtubules relative to kinesin-1 [53, 54]. These residues reside in loops L2, L7, L8, L11, L12, and α-helices α4 and α6 (Fig. 2c). Thus, the contribution of multiple sites increases kinesin-3s’ interaction surface with microtubules and results in a large effect on affinity. This increased affinity then increases the processivity of dimeric kinesin-3 motors [54]. Key residues that result in a 10-fold increased processivity of kinesin-3 versus kinesin-1 are Arg167 in loop 8, Lys266 in loop 11, and Arg346 in α-helix 6 of KIF1A (Fig. 2c) [53].
Coiled coils are important structural features that mediate motor dimerization [55]. Kinesin-3 motors tend not to contain the extended coiled coils that are typical for the tails of other kinesins, but instead contain several smaller predicted coiled-coil regions scattered along the tail (Fig. 2a). It is presently unclear whether all of these contribute to dimer formation. So far, the only direct test of this was performed with the fourth coiled-coil domain of KIF1C, which is sufficient to drive dimerization in a yeast-two-hybrid assay [56]. In KIF1A, KIF13A, and KIF13B, the coiled-coil domains seem to interfere with dimerization. It has been shown that instead, the neck coil alone efficiently dimerizes these motors [57, 58].
FHA domains are small protein modules that recognize phosphothreonine epitopes on proteins and mediate protein–protein interactions [59, 60]. FHA domains have been found in more than 200 different proteins with diverse cellular functions such as transcription, DNA repair, and protein degradation [61]. Besides fulfilling a structural role in kinesin-3 proteins, the FHA domain also confers specific cargo interactions. For example, the FHA domain of KIF13B medicates binding to its cargo transient receptor potential vanilloid 1 (TRPV1). Interestingly, this interaction depends on phosphorylation of KIF13B at T506 in the FHA domain by cyclin-dependent kinase 5 (Cdk-5) [40]. A point mutation that is likely to alter the folding of the FHA domain of KIF1C causes a change in the susceptibility of mice to anthrax lethal toxin, further demonstrating the functional importance of the domain [61, 62].
Several kinesin-3 tails contain domains that allow direct interaction with membranes, e.g. KIF16A contains a START/lipid sterol-binding domain at the C-terminus [26]. KIF1A and KIF1B have a pleckstrin homology (PH) domain that is important for binding cargo vesicles [63], probably through specific interaction with phosphatidylinositol 4,5-bisphosphate (PtdIns(4,5)-P2) [64]. KIF16B possesses a phosphoinositide-binding structural domain (PX), which binds to PtdIns(3,4,5)P3 and is involved in the trafficking of early endosomes [65, 66].
Other kinesin-3 tails contain protein interaction domains, such as a CAP-Gly domain at the C-terminus of KIF13B. CAP-Gly domains bind to sequence motifs at the C-terminus of tubulin and EBs, zinc-finger motifs, and proline rich sequences [67]. KIF1C possesses a proline-rich region at the C-terminus. Proline-rich regions play a structural role and also act as binding sites for protein interaction [68]. In the case of KIF1C, this domain mediates several protein interactions, including the cargo adapter protein BICDR1, 14-3-3 proteins, and Rab6 [56, 69, 70].
Surprisingly, a monomeric motor construct of KIF1A has been observed to undergo processive plus-end directed movement along microtubules [48]. This is thought to be possible due to the presence of the K-loop and a stable microtubule interaction surface that persists throughout the ATPase cycle (Fig. 2c) [49, 54]. However, monomeric KIF1A only moves very slowly (0.15 µm/s) and weakly (~0.15 pN) along microtubules, while multiple KIF1A motors transport cargo at 1.5 µm/s [14, 71]. Teams of 10 monomeric KIF1A motors have been proposed to become approximately 100-fold stronger than a single monomeric motor [72]; however, experimental data on the force generation of kinesin-3 teams are lacking. There is evidence suggesting that kinesin-3 motors exist as inactive monomers in cells until activated by dimerization [58, 73-75]. Other studies suggest that KIF1A motors are dimeric in vivo, but in an autoinhibited state until activated by cargo binding [6, 57]. Thus, the extent to which individual kinesin-3 family members exist as monomers or dimers in cells remains to be elucidated. However, it is clear that a single monomeric motor cannot achieve the high processivity of kinesin-3 mediated cargo transport observed in cells. Thus, these would need either to work in teams formed by recruitment of several monomeric motors to the same cargo, or to form dimers.
MECHANISM OF AUTOINHIBITION
Early work and biochemical characterization of conventional kinesin revealed that the molecule exists in two conformations: a folded inactive conformation and an extended active one [76, 77]. A small peptide region in the tail of kinesin-1 binds to the motor domain to inhibit it [78-80]. While kinesin-3 motors do not contain such an extensive coiled-coil region with a hinge that allows neat folding and unfolding of the tail, inactive kinesin-3 motors have been shown to adopt a compact conformation with a crumpled tail [81], which probably extends when activated and/or under load. That the pool of motors exists in an autoinhibited state in cells is important because in the absence of cargo, motor activity needs to be tightly regulated to avoid microtubule crowding and futile ATP consumption.
Currently, there are two models of autoinhibition that apply to kinesin-3 motors. In the monomer–dimer switch model, intramolecular interactions involving neck and tail regions hold some kinesin-3 motors in a monomeric, inactive state. Upon activation, these motors dimerize with their neck coil and tail regions undergoing intermolecular interactions. In the alternative tail block model, the motors are stable dimers, but regions of the tail interact with the motor or neck domains and interfere with motor activity until cargo binding occupies the tail region and releases the motor. Evidence exists for both models, and the picture emerging is that different kinesin-3 motors might use either or a combination of both of these methods of autoinhibition.
Most KIF1 and KIF13 motors are thought to undergo a monomer–dimer switch. Consistently with an autoinhibited state, the full length CeUnc-104 and MmKIF1A are inactive in motility assays [14, 57]. As a monomeric motor domain construct of KIF1A could produce some directional motion by itself and work as a processive motor when dimerized artificially [48, 75], regions of the neck or tail interfere with motor activity. Indeed, in Unc-104, the two neck helices can form an intramolecular coiled-coil, thereby inhibiting the ATPase and microtubule binding cycle of the motor and holding the motor in a monomeric state [73]. The neck helices can also form an intermolecular coiled-coil, thereby enabling the switch from monomer to dimer, which is required to obtain a processive Unc-104 motor [73]. In MmKIF1A, a similar switch through intra- and intermolecular coiled-coil formation is proposed to occur between the neck coil region and the first coiled-coil domain (CC1). Surprisingly, the truncation of the entire tail results in processive dimeric motors of KIF1A, KIF13A, and KIF13B, while all longer constructs containing CC1 result in monomers that only show diffusive movement [57, 58]. If autoinhibition is prevented by deletion of the flexible hinge between the neck helices in C. elegans Unc-104, the motility of the motor in vitro is unperturbed, but transgenic worms show severe defects in the coordination of their movement [73]. Likewise, mutations in the CC1 segment of KIF1A result in activation of the motor [82, 83]. In the KIF13 subfamily, a proline residue at the junction of neck coil and CC1 provides the flexibility to enable CC1 to fold back and interact with the neck coil. Deletion of this proline residue results in dimerization via the neck coil domains and active, processive motors [58, 84]. Control of the autoinhibited state of the KIF1A motor might also involve the FHA domain and the following coiled coil CC2. A tandem construct of CC1 and FHA domains forms a very stable dimer. Furthermore, the dimerization of CC1–FHA sequesters the CC1 region and makes it unavailable for the autoinhibition of the neck coil region [82]. Also, CC2 can fold back to interact with the FHA domain, which disrupts the motor activity [57]. Disruption of the CC1–FHA dimer severely impairs synaptic vesicle transport and locomotion in C. elegans worms, suggesting that robust dimerization is crucially important for KIF1A function in vivo [83].
Evidence for a tail-block mechanism exists for KIF13B and KIF16B. In KIF16B, microtubule binding is inhibited by the interaction of the second and third coiled coil with the motor domain in an ATP-dependent manner. This tail-mediated inhibition is important for the correct localization of early endosomes to somatodendritic regions in neurons and the recycling of AMPA (α-amino-3-hydroxy-5-methyl-4-isoxazolpropionate) and NGF (nerve growth factor) receptors [85]. An interaction of a tail domain with the motor domain also contributes to the autoinhibition of KIF13B [38, 86]. Upon phosphorylation of KIF13B close to its C-terminus by Par1b/MARK2 (microtubule affinity-regulating kinase), 14-3-3β binds and promotes the intramolecular interaction of KIF13B motor and tail domains. This in turn negatively regulates KIF13B microtubule binding, resulting in the dispersal of the motor in the cytoplasm and a reduction in cell protrusion and axon formation [86]. In addition, KIF1C, which is known to exist as a stable dimer, interacts with 14-3-3 proteins in a phosphorylation-dependent manner [56]. However, whether this mediates an autoinhibitory tail–motor interaction similarly to KIF13B remains to be elucidated.
Taken together, these data suggest specific autoinhibition mechanisms for each kinesin-3 family member. These might require different interaction partners to achieve release from autoinhibition and activate the motors for transport of specific cargoes.
ACTIVATION BY CARGO INTERACTION
Many kinesins are activated upon cargo binding. Full-length KIF13B, also known as guanylate kinase-associated kinesin (GAKIN), exists in an autoinhibited state in solution. It is activated by the direct binding of its cargo, human disc large (hDlg) tumor suppressor [38]. In contrast to KIF1A, full-length KIF13B is active in a gliding assay. This could be because the binding of the C-terminus to the glass surface might mimic the cargo-bound state, thus relieving autoinhibition [38]. In contrast, KIF16B is a monomer in the cytoplasm and dimerizes at the cargo surface. The localized dimerization of KIF16B on early endosomes has been directly observed using Förster resonance energy transfer (FRET) in live cells [58]. Thus, these examples support the idea that due to the diverse cargo binding tail, the different kinesin-3 family members use diverse means of autoinhibition and cargo-dependent release of inhibition, involving changes in the dimerization status for some members and competitive binding of a peptide region that weakly interacts with the motor domain for others. The mechanisms of cargo-mediated activation thus require elucidation for each family member.
While some motors bind their cargo directly, often cargo adapter proteins mediate both the motor activation and cargo recruitment. For C. elegans kinesin-3 motor Unc-104, a number of adapter proteins are known that are involved in cargo loading; a bimolecular fluorescence complementation assay (BiFC) was employed to show that binding of different adapters Unc-16 (JIP3), DNC-1 (DCTN-1/Glued), and SYD-2 (Liprin-α) to Unc-104 results in translocation to different subcellular compartments in neuronal cells. This suggests that adapter proteins can recruit the motor to their cargo and steer their transport [16, 87]. Further, binding of LIN-2 (CASK) and SYD-2 was shown to positively regulate the Unc-104 motor by increasing its velocity, and binding of LIN-2 also increased run lengths. The cargo transport of synaptobrevin-1 (SNB-1) was markedly reduced in the neurons of LIN-2 knockout worms, implying that LIN-2 is an activator of Unc-104 motor [88]. In Ustilago maydis, the cargo adapter Hook protein (Hok1) mediates the recruitment of Kin3 and dynein to early endosomes and regulates bidirectional motility. Hok1 releases Kin3, and this allows for dynein to bind and drive the subsequent change in directionality [41]. Like Kin3, KIF1C binds to another dynein adapter protein, Bicaudal-D-related protein 1 (BICDR-1) [69]. BICDR-1 also binds Rab6A vesicles, thus linking both motors to secretory vesicles and controlling the bidirectional vesicle transport in developing neurons [69]. Centaurin α1 (CENTA1) acts as a cargo adapter for KIF13B and recruits the motor to PtdIns(3,4)P2/PtdIns(3,4,5)P3-containing vesicles [30, 89]. CENTA1 contains two PH domains that bind the headgroups of phosphoinositides, and PH1 also directly binds the FHA domain of KIF13B in a phosphorylation-independent manner [89]. As KIF13B FHA simultaneously interacts with the ArfGAP domain of a second CENTA1 molecule, CENTA1–KIF13B form a heterotetrameric transport complex for PtdIns(3,4,5)P3-rich vesicles [30, 89].
REGULATION BY Rab GTPases
The members of the Rab family of GTPases are known to control the localization of vesicles/organelles in a nucleotide-dependent manner. Rab proteins act at all stages including vesicle formation, motility, and tethering of vesicles to the designated compartment [90]. Rab GTPases exist in either GTP or GDP bound states, and are activated by GEFs (GTP/GDP exchange factors) and switched off by GAPs (GTPase activating factors) [91]. Once activated, the Rab proteins bind to vesicles that are translocated to the destination compartment, where they dock and fuse. The Rab proteins are then recycled back via a cytosolic intermediate [92]. KIF1A and KIF1Bβ both transport Rab3-coated vesicles in the axon. Rab3 is a synaptic vesicle protein that controls the exocytosis of synaptic vesicles [93-95]. It has been found that DENN/MADD (differentially expressed in normal and neoplastic cells/MAP kinase activating death domain), a GEF for Rab3, binds to Rab3 and the tail domain of KIF1A and KIF1Bβ and is thought to mediate the transport to the axon terminal while maintaining Rab3 in the GTP-bound form [13].
Rab6 binds to KIF1C at two sites, to the motor domain and near the C-terminus. Rab6 binding to the motor domain disrupts the motor’s ability to bind microtubules [70], while the binding to the C-terminus might activate cargo loading and relief from autoinhibition. Secretory Rab6 vesicles are transported bidirectionally, and it is thought that the dual ability of Rab6 to activate and inhibit KIF1C might regulate the directional switch. KIF1C also transports Rab11-positive vesicles for the recycling of integrins [15]. Whether Rab11 is directly involved in controlling the activity of KIF1C is yet unclear.
KIF13A binds to the active GTP-bound recycling endosomes associated with Rab11 and controls endosomal sorting and recycling of endosomal cargo [96]. KIF16B transports Rab5-positive early endosomes and Rab14-positive vesicles in non-neuronal cells [31, 66]. Also, the Neurospora kinesin-3 NKin2 colocalizes with the Rab5 GTPase YPT52 [8]. DmKlp98A interacts with Rab14 and Atg8 (autophagic-vesicle associated protein). This allows the motor to transport endocytic and autophagic vesicles [97]. To what extent these Rabs affect kinesin remains to be understood.
SPECIFICITY FOR A SUBSET OF MICROTUBULE TRACKS
The microtubule tracks on which kinesin motors walk are not uniform. Depending on the cell type or its differentiation status, cells express different tubulin isoforms, accumulate microtubules with different posttranslational modifications, and also express different microtubule-associated proteins (MAPs) that decorate the microtubules. Kinesins are known to be sensitive to both changes to tubulin and MAP composition.
Tubulin undergoes a diverse range of chemical modifications known as posttranslational modifications after polymerization into microtubules. These modifications mainly occur on the C-terminal tails of both α- and β-tubulin and include the removal of terminal amino acids, such as detyrosination, and the addition of polyglutamate and polyglycine side chains [98-100]. Considering that the kinesin-3-specific K-loop is thought to interact with the C-terminal tail of β-tubulin (Fig. 2b), it is expected that changes in this region would impact kinesin-3 binding. Further modification at other sites of tubulin have been described, such as the acetylation of K40 in α-tubulin and phosphorylation of tubulin at various sites [101]. These modifications may change the stability of microtubules and act as signposts for motor transport by selectively increasing or decreasing the affinity of certain motors to the microtubule [102]. In line with this idea, knockdown of polyglutamylase PGs1 in ROSA22 mice decreases the localization of KIF1A to neurites [103]. Further, the ciliary localization of kinesin-3 KLP-6 in C. elegans is positively regulated by tubulin deglutamylase CCPP-1 [104]. However, in COS cells, the truncated, constitutively active KIF1A(1-393) was a non-selective motor [105]. The fungal kinesin-3 UncA from A. nidulans has been reported to selectively walk on detyrosinated microtubules, and the tail is necessary and sufficient for this recognition [9, 106]. Also, the N. crassa kinesin-3 NKin2 preferentially binds to a subset of microtubules [8]. However, this feature is not conserved in all fungi, as Kin3 from U. maydis uses all microtubules equally [107]. Like the finding in COS cells, the negative result could be due to the lack of modified microtubules in these cells rather than a different property of the motor, and this would require further investigation to elucidate. The subcellular localization of KIF1C is regulated by acetylation in primary human macrophages in a way that suggests that tubulin acetylation is a negative signal for KIF1C transport [108]. Likewise, KIF1Bβ and KIF1A have been reported to drive lysosomal transport preferentially along tyrosinated (i.e. non-modified) microtubules [109]. These data suggest that most kinesin-3 motors are sensitive to tubulin posttranslational modifications, but with different preferences.
MAPs regulate the assembly and disassembly kinetics of microtubules as well as the interactions of motors with microtubules [110, 111]. Lattice-decorating MAPs such as the neuronal protein tau regulate the attachment rate and can act as roadblocks that affect motors differently, depending on their ability to take side or backwards steps to circumvent the roadblock [112-114]. MAP4, which is a tau-related protein in non-neuronal cells, negatively regulates force generation and transport by dynein, but it positively regulates kinesin-based movement [115, 116]. Thus, MAPs can regulate microtubule-based transport directionality and access of motors to microtubules.
For kinesin-3, MAPs known to regulate the motor include doublecortin-like kinase-1 (DCLK-1), which regulates KIF1 transport of dense core vesicles (DCVs) along dendrites in neurons. DCLK-1 specifically binds to microtubules in dendrites, which acts as a positive signal to promote dendritic transport of KIF1 cargoes. In the absence of DCLK-1, KIF1 motors predominantly transport DCVs into the axon [117]. In C. elegans, the retrograde motility of Unc-104 was affected in tau/PTL-1 (protein with tau-like repeats) knockout worms. Unc-104 usually moves bidirectionally, but in the absence of PTL-1 the motor travels preferentially in anterograde direction [118]. It is thought that kinesin-3 motors cooperate with dynein for bidirectional motility, so whether PTL-1 affects Unc-104 directly or negatively regulates dynein to cause the observed phenotype remains to be elucidated. The microtubule plus-end tracking protein CLASP is required to stimulate the trafficking of KIF1C [119]. KIF1C has also been described to move with growing microtubule plus ends in cells [120]. This could be either due to the preference for unmodified (i.e. freshly assembled) microtubules [108], or due to its fast transport speed and thus ability to catch up with the growing microtubule end [51], or due to its interaction with CLASP [119].
COOPERATION OF MOTORS
Kinesin-3s have been implicated in the bidirectional transport of cargo. This means that when a specific kinesin-3 is inhibited or depleted, the transport of its cargo both towards the plus and the minus end of the microtubule is impaired [15, 118, 121]. It has been suggested that kinesin-3 cooperates with dynein in the bidirectional transport of cargoes, but the mechanism underlying the mutual activation of these opposite-polarity motors remains to be elucidated [122]. It has been suggested that cooperation depends on the opposing force generated, resulting in a mechanical activation [121]. Other proposed models include a steric inhibition mechanism whereby the direct interaction of the opposing motor or accessory protein relieves autoinhibition, and a microtubule tethering mechanism whereby the opposing motor is in a weakly bound state and acts as a processivity factor [122]. This is different to the idea of tug-of-war that has been proposed and reconstituted for kinesin-1 and dynein-mediated transport, where the motors pull against each other and the strongest team wins, i.e. the number of motors of each type loaded to a cargo molecule and the force that each motor can produce determine the net movement of the cargo [123, 124]. Potential linkers to facilitate cooperation of dynein and kinesin-3 include Hook and Bicaudal, cargo adapter proteins that have been identified to interact with both dynein and kinesin-3 tail domains [41, 69, 125, 126]. Interestingly, the presence of BICD2 increases the force generation and processivity of dynein/dynactin [127, 128], demonstrating that these cargo adapter proteins regulate motor activity and could act as switches to control transport directionality within a complex containing two opposing motors. Other control mechanisms could come from accessory proteins such as kinesin-binding protein (KBP), which has been shown to stimulate KIF1B, but inhibit KIF1A-mediated bidirectional transport [28, 129]. If the activity of such regulatory proteins were spatially controlled, this would enable directional switching of transport complexes in the presence of opposing motors.
Kinesin-3 molecules are important cargo transporters in neuronal cells that show a number of remarkable features. Their high affinity to the microtubule surface in all nucleotide states makes them highly processive motors, ideally suited to drive long-distance transport in neuronal cells. Their processivity is so high that even monomeric motor domain constructs show some directional motion. The activity of kinesin-3 motors is tightly regulated, in some motors via a switch from monomer to dimer, in others via autoinhibitory interactions of motor and tail domains. These interactions are relieved by cargo recruitment or regulated by kinases. Kinesin-3 motors are sensitive to the changes in the microtubule track and follow signposting modifications such as posttranslational modifications of tubulin or MAP decoration. Finally, kinesin-3 motors cooperate with dynein to bring about bidirectional transport of cargo. Many of these fascinating features remain to be understood mechanistically. Future work will illuminate this problem and enable us to appreciate kinesin-3 motor physiology, including the causation of the disease states arising from mutated kinesin-3 motors.
Acknowledgments
We thank Kristen Verhey (University of Michigan) and Carolyn Moores (Birkbeck) for useful discussions about kinesin-3 motors, and Andrew McAinsh and Rob Cross for critical reading of the manuscript.
A. S. is a Prize Fellow of the Lister Institute of Preventive Medicine and a Wellcome Trust Investigator (200870/Z/16/Z). N. S. is funded by a Chancellor’s International PhD Scholarship of the University of Warwick.
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